PTM Viewer PTM Viewer

AT5G09810.1

Arabidopsis thaliana [ath]

actin 7

43 PTM sites : 10 PTM types

PLAZA: AT5G09810
Gene Family: HOM05D000173
Other Names: AtACT7; ACT7

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt A 2 ADGEDIQPLVCDNGTGMVKAGFAGDDAPR99
ADGEDIQPLVCDNGTGMVKAGF99
ADGEDIQPLVCDNGTGMVKA99
ADGEDIQPLVCDNGTGM99
ADGEDIQPLVCD99
ADGEDIQPLV5
nta A 2 ADGEDIQPLVCDNGTGMVKAGFAGDDAPR99
119
167a
ADGEDIQPLVCDNGTGMVKAGF99
ADGEDIQPLVCDNGTGMVKA99
ADGEDIQPLVCDNGTGMVK6
ADGEDIQPLVCDNGTGM99
ADGEDIQPLVCD99
ADGEDIQPLV5
so C 12 ADGEDIQPLVCDNGTGMVK110
nt A 21 AGFAGDDAPR99
nt A 31 AVFPSIVGRPR167b
nt H 42 HTGVMVGMGQKDAYVGDEAQSKR119
ph T 43 PRHTGVMVGMGQK114
nt G 48 GMGQKDAYVGDEAQSKR80
nt M 49 MGQKDAYVGDEAQSKR167b
nt K 52 KDAYVGDEAQSKR51a
ub K 52 HTGVMVGMGQKDAYVGDEAQSK168
nt D 53 DAYVGDEAQSKR51a
51b
51c
nt A 60 AQSKRGILTLKYPIE167b
ph S 62 DAYVGDEAQSKR88
114
ac K 63 DAYVGDEAQSKR101
ub K 63 DAYVGDEAQSKR168
ub K 115 VAPEEHPVLLTEAPLNPKANR168
nt T 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILR167b
TTGIVLDSGDGVSH99
nt S 157 SGDGVSHTVPIYE99
nt D 159 DGVSHTVPIYEGYALPHAILRL167b
ub K 193 DLTDSLMKILTER168
ph T 205 GYMFTTTAER114
nt K 217 KLAYVALDYEQE167b
nt Y 220 YVALDYE99
ub K 233 LAYVALDYEQELETAKSSSSVEK168
ub K 240 SSSSVEKNYELPDGQVITIGAER168
nt N 241 NYELPDGQVITIGAER51a
51b
sno C 259 CPEVLFQPSLIGMEAPGIHETTYNSIMK90b
so C 259 FRCPEVLFQPSLIGMEAPGIHETTYNSIMK110
nt T 279 TTYNSIMKCDVDIRKD167b
TTYNSIMKCD99
nt S 283 SIMKCDVDIRKD167b
ox C 287 CDVDIR47
sno C 287 CDVDIR65
169
so C 287 CDVDIRK110
nt N 298 NIVLSGGSTMFPGIADR99
ub K 317 MSKEITALAPSSMK168
ph S 325 EITALAPSSMK88
109
114
ph S 326 EITALAPSSMK88
114
mox M 327 EITALAPSSMK62a
62b
ac K 328 EITALAPSSMKIK101
cr K 328 EITALAPSSMKIK164c
ub K 328 EITALAPSSMKIK168
ub K 330 IKVVAPPER168

Sequence

Length: 377

MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
so S-sulfenylation X
ph Phosphorylation X
ub Ubiquitination X
ac Acetylation X
sno S-nitrosylation X
ox Reversible Cysteine Oxidation X
mox Methionine Oxidation X
cr Crotonylation X
Multiple types X
No domains or active sites found for this protein.

BLAST


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